Farhad Maleki

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Farhad Maleki

Farhad Maleki

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Biography

University of Saskatchewan - Computer Science

Developing scalable software solutions to gain insight from data through machine learning and statistical data analysis
Computer Software
Farhad
Maleki
Toronto, Ontario, Canada
Because of my solid background in math, statistics, and machine learning, and also working with large biological datasets, I know how to apply exploratory and explanatory data analysis methods to gain insight from data and tell a story through visualisations that convey meaning to individuals with various backgrounds.

Experience

  • University of Saskatchewan

    PhD Student

    Farhad worked at University of Saskatchewan as a PhD Student

  • University of Saskatchewan

    Teaching Assistant

    List of courses:
    - Principles of Computer Science
    - Introduction to Computing
    - Developing Object-Oriented Systems
    - Intermediate Data Structures and Algorithms
    - Introduction to Bioinformatics
    - Introduction to Computer Science

  • University of Saskatchewan

    Research Assistant

    Farhad worked at University of Saskatchewan as a Research Assistant

  • University of Saskatchewan

    Researcher

    Farhad worked at University of Saskatchewan as a Researcher

  • Amirkabir University of Technology - Tehran Polytechnic

    Sessional Lecturer and Course Content Designer

    Farhad worked at Amirkabir University of Technology - Tehran Polytechnic as a Sessional Lecturer and Course Content Designer

  • Payame Noor University - PNU

    Lecturer

    Farhad worked at Payame Noor University - PNU as a Lecturer

Education

  • University of Saskatchewan

    Doctor of Philosophy (Ph.D.)

    Computer Science

  • Second Place - Local ACM Programming Contest


    Second Place: Local ACM Programming Contest- University of Saskatchewan

  • Dean’s Scholarship



  • Dean’s Scholarship



  • Dean’s Scholarship



  • Teacher Scholar Doctoral Fellowship


    Declined

  • Teacher Scholar Doctoral Fellowship



  • University of Saskatchewan

    PhD Student



  • University of Saskatchewan

    Teaching Assistant


    List of courses: - Principles of Computer Science - Introduction to Computing - Developing Object-Oriented Systems - Intermediate Data Structures and Algorithms - Introduction to Bioinformatics - Introduction to Computer Science

  • University of Saskatchewan

    Research Assistant



  • University of Saskatchewan

    Researcher



  • Razi University

    Bachelor of Applied Science (BASc)

    Applied Mathematics
    Full tuition waiver award for whole period of study Ranked 21st in National Entrance Exam for MSc. in Computer Science Teaching assistant for -Introduction to Programming -Advanced Programming -Numerical Analysis 1 Working as Computer Lab Technician

  • Amirkabir University of Technology - Tehran Polytechnic

    Master's Degree

    Computer Science
    I was a M.Sc. student in Computer Science at Amirkabir University of Technology, where among other things I have studied Machine Learning, Data Mining, Image Processing, and Optimization. I also have been a member of Algorithm and Computational Geometry (ALGOCG) and Systems and Intelligent Agents (SINA) Laboratories. I graduated with honours.

  • Amirkabir University of Technology - Tehran Polytechnic

    Sessional Lecturer and Course Content Designer



Publications

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Evolutionary approach for developing fast and stable offline humanoid walk

    Thirteenth International Computer 2006 Conference, Iran, Kish Island

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Evolutionary approach for developing fast and stable offline humanoid walk

    Thirteenth International Computer 2006 Conference, Iran, Kish Island

  • Gene Set Databases: A Fountain of Knowledge or a Siren Call?

    ACM

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Evolutionary approach for developing fast and stable offline humanoid walk

    Thirteenth International Computer 2006 Conference, Iran, Kish Island

  • Gene Set Databases: A Fountain of Knowledge or a Siren Call?

    ACM

  • Sample Size and Reproducibility of Gene Set Analysis

    The IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Evolutionary approach for developing fast and stable offline humanoid walk

    Thirteenth International Computer 2006 Conference, Iran, Kish Island

  • Gene Set Databases: A Fountain of Knowledge or a Siren Call?

    ACM

  • Sample Size and Reproducibility of Gene Set Analysis

    The IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

  • Measuring consistency among gene set analysis methods: A systematic study

    Journal of Bioinformatics and Computational Biology

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Evolutionary approach for developing fast and stable offline humanoid walk

    Thirteenth International Computer 2006 Conference, Iran, Kish Island

  • Gene Set Databases: A Fountain of Knowledge or a Siren Call?

    ACM

  • Sample Size and Reproducibility of Gene Set Analysis

    The IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

  • Measuring consistency among gene set analysis methods: A systematic study

    Journal of Bioinformatics and Computational Biology

  • Method Choice in Gene Set Analysis has Important Consequences for Analysis Outcome

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • Size Matters: How Sample Size Affects the Reproducibility and Specificity of Gene Set Analysis

    BMC Human Genomics

  • Gene Set Overlap: An Impediment to Achieving High Specificity in Over-representation Analysis

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • DAPPLE 2: a tool for the homology-based prediction of post-translational modification sites

    Journal of Proteome Research

  • Crop Lodging Prediction from UAV-Acquired Images of Wheat and Canola using a DCNN Augmented with Handcrafted Texture Features

    CVPR2019

  • Evolutionary approach for developing fast and stable offline humanoid walk

    Thirteenth International Computer 2006 Conference, Iran, Kish Island

  • Gene Set Databases: A Fountain of Knowledge or a Siren Call?

    ACM

  • Sample Size and Reproducibility of Gene Set Analysis

    The IEEE International Conference on Bioinformatics and Biomedicine (BIBM)

  • Measuring consistency among gene set analysis methods: A systematic study

    Journal of Bioinformatics and Computational Biology

  • Method Choice in Gene Set Analysis has Important Consequences for Analysis Outcome

    BIOSTEC 2019, 12th International Joint Conference on Biomedical Engineering Systems and Technologies.

  • A Synthetic Kinome Microarray Data Generator

    Journal of Microarrays

Positions

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council

    President

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Research Fest 2016 / Research & Innovation in Computer Science & Bioinformatics

    Lead Organizer

    http://csgcc-devel.usask.ca/researchfest/2016/urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

  • Computer Science Graduate Course Council (CSGCC)

    PhD Representative

    urn:li:fs_position:(ACoAAAzWFqEBbRWUfeQ84CpIIl5AXSFfhmSyREQ,490934925)

COMP 120

1(1)

  • Level:
  • Credit hours: 0

CMPT 280

5(1)

  • Level:
  • Credit hours: 0
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